Variant report

Variant	rs56197161
Chromosome Location	chr3:113281015-113281016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:113277696..113281833-chr3:113284531..113288441,5	MCF-7	breast:
2	chr3:113279187..113281420-chr3:113296138..113298010,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1398733	0.87[EUR][1000 genomes]
rs2447042	0.87[EUR][1000 genomes]
rs4682492	0.87[EUR][1000 genomes]
rs59532653	0.87[EUR][1000 genomes]
rs67512681	0.87[EUR][1000 genomes]
rs72950831	0.87[EUR][1000 genomes]
rs73235097	1.00[AFR][1000 genomes]
rs73237128	1.00[AFR][1000 genomes]
rs73241124	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv1004000	chr3:113116778-113513899	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv877349	chr3:113208224-113323787	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv877350	chr3:113208224-113332235	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113257200-113283400	Weak transcription	Primary B cells from cord blood	blood
2	chr3:113276200-113281400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:113276800-113284800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:113276800-113294200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:113277400-113281200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr3:113277600-113283200	Weak transcription	GM12878-XiMat	blood
7	chr3:113277600-113285600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:113278000-113281600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr3:113278200-113285200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr3:113278600-113281600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:113278800-113281200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr3:113279000-113281200	Enhancers	HMEC	breast
13	chr3:113279200-113300000	Weak transcription	Thymus	Thymus
14	chr3:113279600-113283200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr3:113279800-113282200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:113280000-113286400	Weak transcription	Fetal Thymus	thymus
17	chr3:113280200-113286400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:113280200-113299200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:113280200-113321600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:113280400-113281800	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr3:113280400-113304000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:113280600-113302400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr3:113280600-113314800	Weak transcription	Spleen	Spleen
24	chr3:113280800-113282000	Enhancers	NHEK	skin
25	chr3:113280800-113285600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:113281000-113281600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr3:113281000-113281800	Weak transcription	Primary T cells from cord blood	blood
28	chr3:113281000-113283000	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr3:113281000-113285600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:113281000-113286000	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:113281000-113286400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr3:113281000-113286400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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