Variant report

Variant	rs4682658
Chromosome Location	chr3:134005513-134005514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12493731	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4234423	0.85[EUR][1000 genomes]
rs4577436	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4634087	0.89[EUR][1000 genomes]
rs4682655	0.80[EUR][1000 genomes]
rs4682656	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4682657	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4682672	0.86[EUR][1000 genomes]
rs6439471	0.86[EUR][1000 genomes]
rs6439473	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6439475	0.86[EUR][1000 genomes]
rs6779423	0.86[EUR][1000 genomes]
rs6787345	0.84[EUR][1000 genomes]
rs7627059	0.80[EUR][1000 genomes]
rs9862959	0.86[EUR][1000 genomes]
rs9870797	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9883217	0.80[EUR][1000 genomes]
rs9884008	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134003600-134009800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:134004200-134006000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:134005000-134009800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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