Variant report

Variant	rs6439471
Chromosome Location	chr3:133986746-133986747
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12493731	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28648514	0.92[EUR][1000 genomes]
rs4234422	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4234423	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4234424	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4234426	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4408870	0.83[AMR][1000 genomes]
rs4447762	0.83[AMR][1000 genomes]
rs4470517	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4577436	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634087	0.92[EUR][1000 genomes]
rs4682655	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4682656	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682657	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4682658	0.86[EUR][1000 genomes]
rs4682665	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4682672	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4854617	0.82[AMR][1000 genomes]
rs4854618	0.83[AMR][1000 genomes]
rs4854619	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55688777	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56104814	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56205980	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62271183	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6439459	0.84[AMR][1000 genomes]
rs6439467	0.82[EUR][1000 genomes]
rs6439470	0.90[EUR][1000 genomes]
rs6439473	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439475	0.82[EUR][1000 genomes]
rs6764932	0.84[AMR][1000 genomes]
rs6779423	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787345	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6791361	0.91[EUR][1000 genomes]
rs6795532	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6795658	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6799962	0.82[AMR][1000 genomes]
rs71807032	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7431604	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7433368	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7611104	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7616326	0.92[EUR][1000 genomes]
rs7627059	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7631521	0.84[EUR][1000 genomes]
rs7633386	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7634265	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7646388	0.88[EUR][1000 genomes]
rs9289461	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9812346	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9843401	0.86[AMR][1000 genomes]
rs9862959	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9870797	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9883217	0.92[EUR][1000 genomes]
rs9884008	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133981000-133987000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links