Variant report

Variant	rs9883217
Chromosome Location	chr3:133976138-133976139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133974150..133976164-chr3:133978599..133981177,2	K562	blood:
2	chr3:133967655..133972070-chr3:133976026..133980689,5	K562	blood:
3	chr3:133970647..133972912-chr3:133975711..133978069,2	MCF-7	breast:
4	chr3:133967100..133970573-chr3:133973529..133976629,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163785	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10804626	0.85[ASN][1000 genomes]
rs10804627	0.85[ASN][1000 genomes]
rs10804628	0.82[ASN][1000 genomes]
rs10804629	0.83[ASN][1000 genomes]
rs10935102	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs10935105	0.83[ASN][1000 genomes]
rs11914721	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11922210	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs11925021	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs11927316	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs12485592	0.87[ASN][1000 genomes]
rs12486035	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12487646	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12487925	0.87[ASN][1000 genomes]
rs12488358	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs12491300	0.85[ASN][1000 genomes]
rs12493731	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs12494030	0.98[ASN][1000 genomes]
rs12631354	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs12638802	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs28648514	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28883962	0.85[ASN][1000 genomes]
rs4234422	0.86[EUR][1000 genomes]
rs4234423	0.93[EUR][1000 genomes]
rs4234424	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4234426	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs4286404	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4286405	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4295144	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4349494	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs4470517	0.91[CEU][hapmap]
rs4505670	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4577436	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs4634087	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs4682655	0.87[EUR][1000 genomes]
rs4682656	0.87[EUR][1000 genomes]
rs4682657	0.86[CEU][hapmap];0.87[EUR][1000 genomes]
rs4682658	0.80[EUR][1000 genomes]
rs4682665	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs4682672	0.92[EUR][1000 genomes]
rs4854619	0.91[CEU][hapmap]
rs58480012	0.85[ASN][1000 genomes]
rs58703957	0.87[ASN][1000 genomes]
rs59391701	0.87[ASN][1000 genomes]
rs60326170	0.86[ASN][1000 genomes]
rs60545528	0.85[ASN][1000 genomes]
rs60564425	0.83[ASN][1000 genomes]
rs62271183	0.81[EUR][1000 genomes]
rs6439467	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6439470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439471	0.92[EUR][1000 genomes]
rs6439473	0.83[EUR][1000 genomes]
rs6776195	0.85[ASN][1000 genomes]
rs6776260	0.85[ASN][1000 genomes]
rs6779423	0.92[EUR][1000 genomes]
rs6783989	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6787345	0.90[EUR][1000 genomes]
rs6791361	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795532	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs6795658	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs6800612	0.94[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs7431604	0.90[CEU][hapmap]
rs7432230	1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7433368	0.95[CEU][hapmap]
rs7611104	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs7616326	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7626278	0.86[ASN][1000 genomes]
rs7627059	0.87[EUR][1000 genomes]
rs7631521	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7633386	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7634265	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7646388	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9289461	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs9812346	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs9843401	0.91[CEU][hapmap]
rs9862959	0.80[CEU][hapmap];0.94[EUR][1000 genomes]
rs9870797	0.86[CEU][hapmap];0.89[EUR][1000 genomes]
rs9884008	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522171	chr3:133889405-134156571	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3522172	chr3:133889405-134156571	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133970200-133977000	Weak transcription	Colonic Mucosa	Colon
2	chr3:133970200-133977600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:133970800-133977600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:133971000-133977800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:133971400-133977600	Weak transcription	Osteobl	bone
6	chr3:133971400-133977800	Weak transcription	NHLF	lung
7	chr3:133971400-133979800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:133971600-133977800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:133972000-133979200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:133972200-133979200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:133972400-133976800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:133972400-133979800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:133973200-133979600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:133973600-133977600	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:133975600-133979800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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