Variant report

Variant	rs60564425
Chromosome Location	chr3:133879647-133879648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133879044..133880858-chr3:133887631..133889279,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10804626	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10804627	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10804628	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10804629	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935098	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10935099	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10935100	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10935101	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10935102	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10935105	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11914721	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11922210	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11925021	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11927316	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12485592	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12486035	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12487646	0.96[ASN][1000 genomes]
rs12487925	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12488092	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12488358	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12491300	0.94[ASN][1000 genomes]
rs12493904	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494030	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12494042	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12631354	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12638802	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs14533	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28648514	0.83[ASN][1000 genomes]
rs28883962	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28898351	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36077421	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4077106	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077108	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4286404	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4286405	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4295144	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4349494	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4450813	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4453837	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4453838	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4505670	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4588357	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58480012	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58703957	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59391701	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59839641	0.89[ASN][1000 genomes]
rs60202549	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60326170	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60545528	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6439467	0.92[ASN][1000 genomes]
rs6439470	0.83[ASN][1000 genomes]
rs6776195	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6776260	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6783989	0.95[ASN][1000 genomes]
rs6791361	0.83[ASN][1000 genomes]
rs6800612	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7432230	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7616326	0.83[ASN][1000 genomes]
rs7626278	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7631521	0.90[ASN][1000 genomes]
rs9883217	0.83[ASN][1000 genomes]
rs9884008	0.83[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
2	chr3:133864000-133881000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:133864600-133892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:133867400-133880200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:133869400-133880000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:133869400-133881000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:133869600-133887600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:133869800-133884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr3:133870200-133885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:133870600-133885600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:133870800-133885600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:133871000-133881200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:133871200-133881400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:133871800-133919200	Weak transcription	K562	blood
17	chr3:133872200-133881800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr3:133872400-133880400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:133873400-133891400	Weak transcription	Fetal Brain Female	brain
20	chr3:133873400-133907400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:133873600-133890400	Weak transcription	Esophagus	oesophagus
22	chr3:133873800-133892200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr3:133874400-133887800	Weak transcription	Fetal Heart	heart
24	chr3:133874400-133929400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr3:133874600-133892200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:133874600-133933600	Weak transcription	Colonic Mucosa	Colon
27	chr3:133875400-133880800	Strong transcription	Rectal Mucosa Donor 31	rectum
28	chr3:133876800-133880000	Strong transcription	Fetal Stomach	stomach
29	chr3:133876800-133880000	Strong transcription	NHLF	lung
30	chr3:133876800-133880200	Strong transcription	Fetal Intestine Small	intestine
31	chr3:133876800-133885800	Strong transcription	Primary B cells from peripheral blood	blood
32	chr3:133877600-133907400	Weak transcription	Colon Smooth Muscle	Colon
33	chr3:133877600-133935200	Weak transcription	Psoas Muscle	Psoas
34	chr3:133877800-133884800	Weak transcription	Brain Germinal Matrix	brain
35	chr3:133877800-133885200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr3:133877800-133894200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr3:133877800-133894400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:133877800-133894600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:133877800-133920200	Weak transcription	Brain Substantia Nigra	brain
40	chr3:133877800-133950200	Weak transcription	Small Intestine	intestine
41	chr3:133878000-133893000	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr3:133878000-133894400	Weak transcription	NHDF-Ad	bronchial
43	chr3:133878200-133881600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:133878200-133891600	Weak transcription	Brain Anterior Caudate	brain
45	chr3:133878200-133892400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr3:133878200-133892400	Weak transcription	HSMMtube	muscle
47	chr3:133878200-133893400	Weak transcription	Brain Hippocampus Middle	brain
48	chr3:133878200-133901600	Weak transcription	Fetal Brain Male	brain
49	chr3:133878400-133880600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr3:133878400-133880800	Weak transcription	Fetal Thymus	thymus

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