Variant report

Variant	rs4588357
Chromosome Location	chr3:133873102-133873103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLCO2A1-2	chr3:133871488-133873112	NONHSAT092227

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10804626	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10804627	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10804628	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10804629	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10935098	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10935099	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10935100	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10935101	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10935102	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935105	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11914721	0.95[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11922210	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11925021	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11927316	0.95[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12485592	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12486035	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12487022	0.89[EUR][1000 genomes]
rs12487646	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12487925	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12488092	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12488358	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12491300	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12493904	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12494042	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12631354	0.95[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12635144	0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12638802	0.95[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs14533	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28883962	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28898351	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs36077421	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4077106	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4077108	0.96[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4286404	0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4286405	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4295144	0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4349494	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4450813	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4453837	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4453838	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4505670	0.95[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58480012	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58703957	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59391701	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59839641	0.97[ASN][1000 genomes]
rs60202549	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60326170	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60545528	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60564425	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6439467	0.86[ASN][1000 genomes]
rs6439470	0.95[CHB][hapmap];0.94[CHD][hapmap];0.83[JPT][hapmap]
rs6776195	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6776260	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6783989	0.89[ASN][1000 genomes]
rs6800612	0.88[CHB][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7432230	0.95[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7626278	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631521	0.84[ASN][1000 genomes]
rs9883217	0.95[CHB][hapmap];0.83[JPT][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133862600-133873600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr3:133862600-133873600	Weak transcription	Fetal Heart	heart
3	chr3:133862800-133876800	Weak transcription	Small Intestine	intestine
4	chr3:133863000-133876800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:133863000-133876800	Weak transcription	Brain Angular Gyrus	brain
6	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
7	chr3:133863200-133877000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:133863200-133877400	Weak transcription	Psoas Muscle	Psoas
9	chr3:133864000-133873200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:133864000-133881000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:133864600-133892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:133864800-133876800	Weak transcription	Brain Substantia Nigra	brain
14	chr3:133865200-133873200	Weak transcription	Fetal Brain Male	brain
15	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr3:133867400-133879200	Strong transcription	Primary T cells from cord blood	blood
17	chr3:133867400-133880200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:133867800-133873200	Weak transcription	A549	lung
19	chr3:133868400-133877400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:133868400-133879200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:133868600-133875600	Weak transcription	HSMMtube	muscle
22	chr3:133869000-133873600	Weak transcription	Hela-S3	cervix
23	chr3:133869200-133873400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr3:133869200-133879000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:133869400-133878400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:133869400-133879000	Strong transcription	Fetal Muscle Leg	muscle
27	chr3:133869400-133880000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:133869400-133881000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:133869600-133878400	Strong transcription	HMEC	breast
30	chr3:133869600-133879200	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:133869600-133887600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr3:133869800-133873600	Weak transcription	NHDF-Ad	bronchial
33	chr3:133869800-133874200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr3:133869800-133884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr3:133870000-133874800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:133870200-133885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:133870400-133879000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr3:133870400-133879000	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr3:133870400-133879200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr3:133870400-133879200	Strong transcription	Dnd41	blood
41	chr3:133870400-133879400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr3:133870400-133879600	Strong transcription	Fetal Intestine Large	intestine
43	chr3:133870600-133874200	Strong transcription	Brain Anterior Caudate	brain
44	chr3:133870600-133878600	Strong transcription	Liver	Liver
45	chr3:133870600-133879000	Strong transcription	Placenta	Placenta
46	chr3:133870600-133885600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:133870800-133873400	Strong transcription	Fetal Brain Female	brain
48	chr3:133870800-133874800	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr3:133870800-133876800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr3:133870800-133878200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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