Variant report

Variant	rs10935101
Chromosome Location	chr3:133863617-133863618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133858232..133859742-chr3:133862491..133864984,2	MCF-7	breast:
2	chr3:133862684..133865458-chr3:133867741..133869409,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10804626	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10804627	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10804628	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10804629	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10935098	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10935099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10935105	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11914721	1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11922210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11925021	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11927316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12485592	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12486035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12487646	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12487925	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12488092	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12488358	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12491300	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12493904	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12494030	0.80[ASN][1000 genomes]
rs12494042	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12631354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12635144	0.82[JPT][hapmap];1.00[MEX][hapmap]
rs12638802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs14533	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28883962	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28898351	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36077421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077106	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077108	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4286404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4286405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4295144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4349494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4450813	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4453837	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4453838	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4505670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4588357	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58480012	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58703957	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59391701	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59839641	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60202549	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60326170	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60545528	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60564425	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6439467	0.87[ASN][1000 genomes]
rs6439470	1.00[CHB][hapmap];0.91[CHD][hapmap];0.83[JPT][hapmap]
rs6439472	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap]
rs6776195	1.00[CEU][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6776260	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6783989	0.90[ASN][1000 genomes]
rs6800612	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7432230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7626278	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7631521	0.85[ASN][1000 genomes]
rs9883217	1.00[CHB][hapmap];0.83[JPT][hapmap]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133842000-133872600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr3:133842600-133870600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:133842800-133872000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr3:133843000-133871200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:133843000-133872600	Weak transcription	Gastric	stomach
6	chr3:133848400-133866400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:133848400-133867400	Weak transcription	Primary T cells from cord blood	blood
8	chr3:133848600-133865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:133848600-133867600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:133848600-133872600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr3:133852000-133866000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:133853600-133870600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:133853600-133871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:133853800-133867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr3:133854400-133872400	Weak transcription	NHEK	skin
16	chr3:133855400-133871000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:133856400-133872600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:133858000-133870800	Weak transcription	Fetal Brain Female	brain
19	chr3:133858000-133871800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr3:133859200-133865800	Weak transcription	Esophagus	oesophagus
21	chr3:133859200-133866000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:133859400-133871200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:133859400-133872600	Weak transcription	Aorta	Aorta
24	chr3:133859600-133864800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr3:133861000-133867800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr3:133862000-133865200	Enhancers	HUVEC	blood vessel
27	chr3:133862200-133870600	Weak transcription	Brain Anterior Caudate	brain
28	chr3:133862600-133865000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:133862600-133869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:133862600-133870400	Weak transcription	Dnd41	blood
31	chr3:133862600-133873600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr3:133862600-133873600	Weak transcription	Fetal Heart	heart
33	chr3:133862800-133863800	Enhancers	Ovary	ovary
34	chr3:133862800-133863800	Enhancers	Pancreas	Pancrea
35	chr3:133862800-133864000	Enhancers	Adipose Nuclei	Adipose
36	chr3:133862800-133864200	Enhancers	Spleen	Spleen
37	chr3:133862800-133864800	Enhancers	Placenta	Placenta
38	chr3:133862800-133865200	Enhancers	Left Ventricle	heart
39	chr3:133862800-133865400	Enhancers	Lung	lung
40	chr3:133862800-133866200	Enhancers	Fetal Muscle Trunk	muscle
41	chr3:133862800-133866200	Enhancers	Fetal Muscle Leg	muscle
42	chr3:133862800-133872600	Weak transcription	NH-A	brain
43	chr3:133862800-133876800	Weak transcription	Small Intestine	intestine
44	chr3:133863000-133864400	Enhancers	Fetal Stomach	stomach
45	chr3:133863000-133870400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr3:133863000-133872400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr3:133863000-133872400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr3:133863000-133876800	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr3:133863000-133876800	Weak transcription	Brain Angular Gyrus	brain
50	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood

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