Variant report

Variant	rs12493904
Chromosome Location	chr3:133874881-133874882
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133869963..133871897-chr3:133873500..133875119,2	K562	blood:
2	chr3:133874050..133876554-chr3:133881002..133883004,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10804626	1.00[CEU][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10804627	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10804628	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10804629	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10935098	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935099	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10935100	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10935101	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10935102	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10935105	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11914721	1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11922210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11925021	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11927316	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12485592	1.00[CEU][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12486035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12487646	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12487925	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12488092	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488358	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12491300	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12494030	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12494042	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12631354	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12635144	0.82[JPT][hapmap]
rs12638802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs14533	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28883962	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28898351	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36077421	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077106	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4077108	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4286404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4286405	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4295144	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4349494	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4450813	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4453837	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4453838	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505670	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4588357	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58480012	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58703957	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59391701	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59839641	0.94[ASN][1000 genomes]
rs60202549	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60326170	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60545528	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60564425	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6439467	0.89[ASN][1000 genomes]
rs6439470	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs6439472	1.00[CEU][hapmap]
rs6776195	1.00[CEU][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6776260	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6783989	0.92[ASN][1000 genomes]
rs6800612	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432230	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7626278	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7631521	0.87[ASN][1000 genomes]
rs9883217	1.00[CHB][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133862800-133876800	Weak transcription	Small Intestine	intestine
2	chr3:133863000-133876800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:133863000-133876800	Weak transcription	Brain Angular Gyrus	brain
4	chr3:133863000-133902200	Weak transcription	GM12878-XiMat	blood
5	chr3:133863200-133877000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:133863200-133877400	Weak transcription	Psoas Muscle	Psoas
7	chr3:133864000-133881000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:133864200-133899800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr3:133864600-133892400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:133864800-133876800	Weak transcription	Brain Substantia Nigra	brain
11	chr3:133866200-133898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:133867400-133879200	Strong transcription	Primary T cells from cord blood	blood
13	chr3:133867400-133880200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:133868400-133877400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:133868400-133879200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr3:133868600-133875600	Weak transcription	HSMMtube	muscle
17	chr3:133869200-133879000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr3:133869400-133878400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:133869400-133879000	Strong transcription	Fetal Muscle Leg	muscle
20	chr3:133869400-133880000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:133869400-133881000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:133869600-133878400	Strong transcription	HMEC	breast
23	chr3:133869600-133879200	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr3:133869600-133887600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:133869800-133884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr3:133870200-133885800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:133870400-133879000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:133870400-133879000	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr3:133870400-133879200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr3:133870400-133879200	Strong transcription	Dnd41	blood
31	chr3:133870400-133879400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:133870400-133879600	Strong transcription	Fetal Intestine Large	intestine
33	chr3:133870600-133878600	Strong transcription	Liver	Liver
34	chr3:133870600-133879000	Strong transcription	Placenta	Placenta
35	chr3:133870600-133885600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:133870800-133876800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr3:133870800-133878200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr3:133870800-133879400	Strong transcription	Primary B cells from cord blood	blood
39	chr3:133870800-133879400	Strong transcription	HSMM	muscle
40	chr3:133870800-133885600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr3:133871000-133878400	Strong transcription	Stomach Smooth Muscle	stomach
42	chr3:133871000-133879000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr3:133871000-133881200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr3:133871200-133881400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:133871400-133877000	Weak transcription	Brain Cingulate Gyrus	brain
46	chr3:133871800-133876000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr3:133871800-133878400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr3:133871800-133879000	Strong transcription	Adipose Nuclei	Adipose
49	chr3:133871800-133919200	Weak transcription	K562	blood
50	chr3:133872000-133876000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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