Variant report

Variant	rs4682873
Chromosome Location	chr3:43275714-43275715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2372368	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372369	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372370	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372371	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4016131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6770953	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773607	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611208	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs938917	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880888	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43272800-43277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43273200-43276200	Weak transcription	HUVEC	blood vessel
3	chr3:43273200-43277200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:43273600-43276000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:43273600-43276000	Weak transcription	NHLF	lung
6	chr3:43273600-43277200	Weak transcription	NHEK	skin
7	chr3:43273600-43277400	Weak transcription	HMEC	breast
8	chr3:43273600-43277800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:43274000-43276200	Enhancers	Fetal Thymus	thymus
10	chr3:43274400-43276200	Enhancers	Thymus	Thymus
11	chr3:43275200-43276600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:43275400-43276000	Enhancers	Gastric	stomach
13	chr3:43275400-43276200	Enhancers	Pancreas	Pancrea
14	chr3:43275600-43275800	Bivalent Enhancer	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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