Variant report

Variant	rs7611208
Chromosome Location	chr3:43266218-43266219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2372368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4016131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6770953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs938917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9880888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965160	chr3:43264197-43270925	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43256200-43266800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr3:43256200-43267000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr3:43257200-43269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:43257400-43266600	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:43261600-43267200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr3:43262200-43266800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:43263200-43266600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:43263200-43267000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:43263400-43266600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr3:43264600-43266600	Enhancers	Primary T cells from cord blood	blood
11	chr3:43265400-43266600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:43265600-43266600	Enhancers	Liver	Liver
13	chr3:43266200-43266400	Enhancers	Primary T cells fromperipheralblood	blood
14	chr3:43266200-43266400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr3:43266200-43266400	Enhancers	Fetal Thymus	thymus
16	chr3:43266200-43266400	Enhancers	Pancreas	Pancrea
17	chr3:43266200-43266600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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