Variant report

Variant	rs9880888
Chromosome Location	chr3:43272171-43272172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1120779	1.00[MEX][hapmap]
rs1395373	1.00[MEX][hapmap]
rs1472807	1.00[MEX][hapmap]
rs2036616	1.00[MEX][hapmap]
rs2372368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372369	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4016131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[MEX][hapmap]
rs4642093	1.00[MEX][hapmap]
rs4682873	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[MEX][hapmap]
rs6441771	1.00[MEX][hapmap]
rs6770953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6773607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7636644	1.00[MEX][hapmap]
rs906156	1.00[MEX][hapmap]
rs906157	1.00[MEX][hapmap]
rs938917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43269600-43272600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:43271800-43272200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:43271800-43272200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:43271800-43273600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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