Variant report

Variant	rs4642093
Chromosome Location	chr3:43379846-43379847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:25)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr3:43379737-43380078	K562	blood:	n/a	n/a
2	SETDB1	chr3:43379593-43380581	U2OS	brain:	n/a	n/a
3	TRIM28	chr3:43379734-43380126	K562	blood:	n/a	n/a
4	USF1	chr3:43379829-43380102	A549	lung:	n/a	n/a
5	ZNF143	chr3:43379792-43380074	Hela-S3	cervix:	n/a	n/a
6	CBX3	chr3:43379739-43380204	HCT-116	colon:	n/a	n/a
7	SETDB1	chr3:43379741-43380109	K562	blood:	n/a	n/a
8	CBX3	chr3:43379700-43380179	K562	blood:	n/a	n/a
9	ZNF143	chr3:43379727-43380127	K562	blood:	n/a	n/a
10	CBX3	chr3:43379632-43380241	HCT-116	colon:	n/a	n/a
11	EP300	chr3:43379750-43380096	K562	blood:	n/a	n/a
12	ZNF143	chr3:43379751-43380131	GM12878	blood:	n/a	n/a
13	TRIM28	chr3:43379541-43380202	K562	blood:	n/a	n/a
14	USF1	chr3:43379748-43380101	A549	lung:	n/a	n/a
15	ZNF143	chr3:43379747-43380115	H1-hESC	embryonic stem cell:	n/a	n/a
16	RAD21	chr3:43379801-43380024	SK-N-SH_RA	brain:	n/a	n/a
17	KAP1	chr3:43379463-43380901	K562	blood:	n/a	n/a
18	TCF12	chr3:43379672-43380137	A549	lung:	n/a	n/a
19	KAP1	chr3:43379583-43380259	HEK293	kidney:	n/a	n/a
20	KAP1	chr3:43379702-43380128	U2OS	brain:	n/a	n/a
21	USF1	chr3:43379747-43380104	HCT-116	colon:	n/a	n/a
22	SETDB1	chr3:43378919-43380423	K562	blood:	n/a	n/a
23	TCF12	chr3:43379810-43380084	A549	lung:	n/a	n/a
24	CBX3	chr3:43379686-43380165	K562	blood:	n/a	n/a
25	POLR2A	chr3:43378561-43380773	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
SNRK	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10084663	0.87[AFR][1000 genomes]
rs11129997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs1120779	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395373	1.00[MEX][hapmap];0.94[MKK][hapmap]
rs1472807	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2135510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4339089	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4420837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4470482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4569634	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4682673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	1.00[AMR][1000 genomes]
rs4683365	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6442145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620124	1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	0.94[AFR][1000 genomes]
rs9847454	0.82[AFR][1000 genomes]
rs9859465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872346	1.00[AMR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43373800-43383400	Strong transcription	HUVEC	blood vessel
3	chr3:43374000-43383400	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:43374400-43385000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:43375200-43381000	ZNF genes & repeats	Dnd41	blood
6	chr3:43375200-43382000	ZNF genes & repeats	Fetal Muscle Leg	muscle
7	chr3:43375600-43381000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr3:43375600-43382000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr3:43375800-43380800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr3:43375800-43381000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr3:43375800-43381400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:43375800-43382200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr3:43375800-43382600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr3:43376000-43380800	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr3:43376000-43381000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:43376200-43381000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr3:43376200-43381200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:43376200-43382200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:43376600-43380600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
20	chr3:43376600-43380800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr3:43376600-43380800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
22	chr3:43376600-43381000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:43376600-43381000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr3:43376600-43381000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr3:43376600-43381000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
26	chr3:43376600-43381000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:43376600-43381000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
28	chr3:43376600-43381000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
29	chr3:43376600-43382000	ZNF genes & repeats	Primary B cells from cord blood	blood
30	chr3:43376600-43382000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
31	chr3:43376600-43382200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
32	chr3:43376600-43382400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:43376800-43380800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr3:43376800-43380800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
35	chr3:43376800-43381000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr3:43376800-43381000	ZNF genes & repeats	Brain Anterior Caudate	brain
37	chr3:43376800-43381000	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
38	chr3:43377000-43380000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr3:43377000-43380800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
40	chr3:43377000-43381000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:43377000-43381000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
42	chr3:43377000-43381200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:43377000-43382000	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr3:43377000-43385800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr3:43377200-43380200	ZNF genes & repeats	Fetal Lung	lung
46	chr3:43377200-43380800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
47	chr3:43377200-43380800	ZNF genes & repeats	Liver	Liver
48	chr3:43377200-43381000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
49	chr3:43377200-43381000	ZNF genes & repeats	Thymus	Thymus
50	chr3:43377200-43381200	ZNF genes & repeats	Fetal Intestine Large	intestine

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