Variant report

Variant	rs906158
Chromosome Location	chr3:43420754-43420755
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs11129997	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.91[YRI][hapmap];0.90[AFR][1000 genomes]
rs1120779	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	1.00[AMR][1000 genomes]
rs1472807	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	1.00[AMR][1000 genomes]
rs2036616	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2135510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	1.00[AMR][1000 genomes]
rs2372358	1.00[AMR][1000 genomes]
rs2372359	1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	1.00[AMR][1000 genomes]
rs4234429	0.81[AFR][1000 genomes]
rs4234466	1.00[AMR][1000 genomes]
rs4339089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	1.00[AMR][1000 genomes]
rs4420837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	1.00[AMR][1000 genomes]
rs4470482	1.00[AMR][1000 genomes]
rs4569634	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	1.00[AMR][1000 genomes]
rs4682674	1.00[AMR][1000 genomes]
rs4682681	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4683365	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6442145	1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	1.00[AMR][1000 genomes]
rs6793755	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618790	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620124	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628620	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7636644	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	1.00[AMR][1000 genomes]
rs906156	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	0.81[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	0.90[AFR][1000 genomes]
rs9847454	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs9859465	1.00[AMR][1000 genomes]
rs9863775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872346	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
4	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr3:43411800-43421000	Weak transcription	Lung	lung
6	chr3:43415400-43421000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:43416200-43420800	Weak transcription	Fetal Muscle Leg	muscle
8	chr3:43419200-43421200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:43419200-43421200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:43419400-43420800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:43419400-43421200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr3:43419400-43421400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr3:43419400-43421400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr3:43419400-43421400	Enhancers	Adipose Nuclei	Adipose
15	chr3:43419400-43421600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr3:43419400-43421600	Enhancers	Colon Smooth Muscle	Colon
17	chr3:43419400-43421600	Enhancers	Osteobl	bone
18	chr3:43419600-43420800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr3:43419600-43420800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr3:43419600-43421400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:43419600-43421400	Enhancers	Rectal Smooth Muscle	rectum
22	chr3:43419800-43420800	Enhancers	NHLF	lung
23	chr3:43419800-43421400	Enhancers	Stomach Smooth Muscle	stomach
24	chr3:43419800-43427400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr3:43419800-43427400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr3:43420000-43420800	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:43420000-43422600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr3:43420000-43427400	Weak transcription	Primary T cells from cord blood	blood
29	chr3:43420200-43420800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:43420200-43420800	Enhancers	HSMM	muscle
31	chr3:43420200-43421000	Weak transcription	Fetal Thymus	thymus
32	chr3:43420200-43421200	Enhancers	H9 Cell Line	embryonic stem cell
33	chr3:43420200-43421200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr3:43420200-43421200	Enhancers	Right Atrium	heart
35	chr3:43420200-43421200	Enhancers	NHDF-Ad	bronchial
36	chr3:43420200-43421400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:43420200-43421400	Enhancers	Fetal Stomach	stomach
38	chr3:43420400-43420800	Enhancers	HSMMtube	muscle
39	chr3:43420400-43420800	Enhancers	NH-A	brain
40	chr3:43420400-43421000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr3:43420400-43428000	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr3:43420400-43428800	Weak transcription	Thymus	Thymus
43	chr3:43420400-43429200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:43420400-43429600	Weak transcription	Psoas Muscle	Psoas
45	chr3:43420400-43431000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr3:43420600-43420800	Enhancers	Liver	Liver
47	chr3:43420600-43421000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr3:43420600-43421000	Weak transcription	Left Ventricle	heart

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