Variant report

Variant	rs4346523
Chromosome Location	chr3:43318134-43318135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43318026..43323143-chr3:43324896..43329245,5	K562	blood:
2	chr3:43317639..43319336-chr3:43326844..43328834,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10084663	0.81[AFR][1000 genomes]
rs11129997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.90[YRI][hapmap];1.00[AFR][1000 genomes]
rs1120779	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	1.00[AMR][1000 genomes]
rs1395373	1.00[MEX][hapmap]
rs1472807	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2135510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	1.00[AMR][1000 genomes]
rs2372358	1.00[AMR][1000 genomes]
rs2372359	1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	1.00[AMR][1000 genomes]
rs4234466	1.00[AMR][1000 genomes]
rs4339089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	1.00[AMR][1000 genomes]
rs4420837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	1.00[AMR][1000 genomes]
rs4470482	1.00[AMR][1000 genomes]
rs4569634	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	1.00[AMR][1000 genomes]
rs4682674	1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	1.00[AMR][1000 genomes]
rs4683365	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6442145	1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	1.00[AMR][1000 genomes]
rs6793755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	1.00[AFR][1000 genomes]
rs9859465	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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