Variant report

Variant	rs6775392
Chromosome Location	chr3:43384139-43384140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43383836-43384320	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr3:43383468-43384599	HepG2	liver:	n/a	n/a
3	POLR2A	chr3:43383695-43384421	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
SNRK	TF binding region

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10084663	0.81[AFR][1000 genomes]
rs11129997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.90[YRI][hapmap];1.00[AFR][1000 genomes]
rs1120779	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	1.00[AMR][1000 genomes]
rs1472807	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs2135510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	1.00[AMR][1000 genomes]
rs2372358	1.00[AMR][1000 genomes]
rs2372359	1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	1.00[AMR][1000 genomes]
rs4234466	1.00[AMR][1000 genomes]
rs4339089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	1.00[AMR][1000 genomes]
rs4420837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	1.00[AMR][1000 genomes]
rs4470482	1.00[AMR][1000 genomes]
rs4569634	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	1.00[AMR][1000 genomes]
rs4682674	1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	1.00[AMR][1000 genomes]
rs4683365	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6442145	1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	1.00[AMR][1000 genomes]
rs6793755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620124	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	1.00[ASW][hapmap];1.00[LWK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	1.00[AFR][1000 genomes]
rs9847454	0.87[AFR][1000 genomes]
rs9859465	1.00[AMR][1000 genomes]
rs9872346	1.00[AMR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43374400-43385000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:43377000-43385800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:43379000-43385400	Strong transcription	Placenta Amnion	Placenta Amnion
5	chr3:43379600-43392800	Strong transcription	Placenta	Placenta
6	chr3:43380000-43385200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:43380000-43387400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:43380000-43387600	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr3:43380000-43392200	Strong transcription	HepG2	liver
10	chr3:43380000-43392800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:43380200-43386200	Strong transcription	Fetal Lung	lung
12	chr3:43380200-43386800	Strong transcription	HSMM	muscle
13	chr3:43380600-43385200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:43380600-43385800	Strong transcription	Lung	lung
15	chr3:43380800-43385600	Strong transcription	Stomach Smooth Muscle	stomach
16	chr3:43380800-43386400	Strong transcription	Brain Hippocampus Middle	brain
17	chr3:43380800-43386800	Weak transcription	Psoas Muscle	Psoas
18	chr3:43380800-43391800	Strong transcription	Fetal Stomach	stomach
19	chr3:43380800-43392600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:43380800-43392800	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr3:43380800-43392800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr3:43380800-43393000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:43380800-43393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:43381000-43384800	Strong transcription	Dnd41	blood
25	chr3:43381000-43385000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr3:43381000-43385400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:43381000-43385600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:43381000-43385600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:43381000-43386800	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr3:43381000-43388000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr3:43381000-43389400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr3:43381000-43392800	Weak transcription	Fetal Brain Male	brain
33	chr3:43381000-43393800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
35	chr3:43381200-43388800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr3:43381200-43392800	Strong transcription	Fetal Intestine Large	intestine
37	chr3:43381400-43385400	Strong transcription	Colon Smooth Muscle	Colon
38	chr3:43381400-43385600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:43381400-43385600	Strong transcription	Rectal Smooth Muscle	rectum
40	chr3:43381400-43386200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:43381400-43387600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr3:43381400-43392600	Strong transcription	Primary hematopoietic stem cells	blood
43	chr3:43381400-43392800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr3:43381400-43393000	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:43381600-43384400	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr3:43381600-43386200	Strong transcription	Osteobl	bone
47	chr3:43381600-43387200	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr3:43381600-43387600	Strong transcription	NHEK	skin
49	chr3:43381600-43387800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr3:43381600-43392200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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