Variant report

Variant	rs7636644
Chromosome Location	chr3:43394259-43394260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43389522-43394326	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:43394094-43394277	HUVEC	blood vessel:	n/a	n/a
3	CEBPB	chr3:43393986-43394376	A549	lung:	n/a	n/a
4	POLR2A	chr3:43394049-43394709	HUVEC	blood vessel:	n/a	n/a
5	POLR2A	chr3:43392481-43394283	HUVEC	blood vessel:	n/a	n/a
6	CEBPB	chr3:43394052-43394371	IMR90	lung:	n/a	n/a
7	CEBPB	chr3:43394044-43394365	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43390162..43392791-chr3:43393918..43397440,3	K562	blood:
2	chr3:43388465..43391371-chr3:43394081..43396084,2	MCF-7	breast:

Variant related genes	Relation type
SNRK-AS1	TF binding region
ENSG00000271941	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10084663	0.87[AFR][1000 genomes]
rs11129997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs1120779	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395373	1.00[MEX][hapmap];0.94[MKK][hapmap]
rs1472807	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2135510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4339089	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4420837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4470482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4569634	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	1.00[AMR][1000 genomes]
rs4683365	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6442145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620124	1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7647197	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	0.94[AFR][1000 genomes]
rs9847454	0.82[AFR][1000 genomes]
rs9859465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872346	1.00[AMR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
2	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:43385200-43396800	Weak transcription	Ovary	ovary
4	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
6	chr3:43389200-43400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:43390600-43394400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:43390600-43394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:43390600-43394800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr3:43390600-43407200	Weak transcription	Gastric	stomach
13	chr3:43390800-43402200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr3:43391000-43395200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:43391400-43394800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:43391600-43395200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:43391600-43395200	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:43391600-43395200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:43391600-43396000	Weak transcription	Spleen	Spleen
22	chr3:43391600-43402000	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:43391600-43404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
25	chr3:43391800-43394600	Strong transcription	HSMM	muscle
26	chr3:43392200-43394400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
27	chr3:43392200-43395800	Weak transcription	HepG2	liver
28	chr3:43392200-43396600	Weak transcription	HSMMtube	muscle
29	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr3:43392400-43395000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr3:43392400-43396400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:43392600-43397000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr3:43392800-43394400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:43392800-43395000	Weak transcription	Liver	Liver
35	chr3:43392800-43395400	Weak transcription	Placenta	Placenta
36	chr3:43392800-43395600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:43392800-43402200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr3:43393000-43395000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr3:43393000-43395000	Weak transcription	NHLF	lung
40	chr3:43393000-43395200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:43393000-43395200	Weak transcription	Esophagus	oesophagus
42	chr3:43393000-43395200	Weak transcription	Fetal Stomach	stomach
43	chr3:43393000-43395600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr3:43393000-43396000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr3:43393000-43402000	Weak transcription	Left Ventricle	heart
46	chr3:43393000-43405000	Weak transcription	Pancreas	Pancrea
47	chr3:43393200-43394600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
48	chr3:43393200-43395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr3:43393200-43396000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
50	chr3:43393200-43396000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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