Variant report

Variant	rs4682684
Chromosome Location	chr3:43393238-43393239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43389522-43394326	HepG2	liver:	n/a	n/a
2	POLR2A	chr3:43392481-43394283	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr3:43393174-43393458	HepG2	liver:	n/a	n/a
4	POLR2A	chr3:43393183-43393516	HepG2	liver:	n/a	n/a
5	POLR2A	chr3:43393033-43394118	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr3:43393122-43393269	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr3:43392434-43394122	K562	blood:	n/a	n/a
8	FOSL2	chr3:43392948-43393356	HepG2	liver:	n/a	n/a
9	POLR2A	chr3:43392859-43394022	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr3:43392986-43394031	HUVEC	blood vessel:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANO10-1	chr3:43393090-43394060	XLOC_003102
2	lnc-ANO10-1	chr3:43393090-43393454	ENSG00000234617.1

No data

Variant related genes	Relation type
ENSG00000271941	TF binding region

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10084663	0.81[AFR][1000 genomes]
rs11129997	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.80[YRI][hapmap];1.00[AFR][1000 genomes]
rs1120779	1.00[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	1.00[AMR][1000 genomes]
rs1395373	1.00[MEX][hapmap]
rs1472807	1.00[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1506618	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs2135510	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	1.00[AMR][1000 genomes]
rs2372358	1.00[AMR][1000 genomes]
rs2372359	1.00[AMR][1000 genomes]
rs2888311	0.89[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	1.00[AMR][1000 genomes]
rs4234466	1.00[AMR][1000 genomes]
rs4339089	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	1.00[AMR][1000 genomes]
rs4420837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	1.00[AMR][1000 genomes]
rs4470482	1.00[AMR][1000 genomes]
rs4569634	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	1.00[AMR][1000 genomes]
rs4682674	1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	1.00[ASW][hapmap];0.91[LWK][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	1.00[AMR][1000 genomes]
rs4683365	1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs6442145	1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	1.00[AMR][1000 genomes]
rs6767741	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[ASW][hapmap];0.91[LWK][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	1.00[AMR][1000 genomes]
rs6793755	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620124	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	0.90[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	1.00[AFR][1000 genomes]
rs9847454	0.87[AFR][1000 genomes]
rs9859465	1.00[AMR][1000 genomes]
rs9872346	1.00[AMR][1000 genomes]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43381000-43393800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
4	chr3:43382000-43393400	Strong transcription	Primary B cells from cord blood	blood
5	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:43384200-43394000	Weak transcription	Fetal Heart	heart
7	chr3:43385200-43396800	Weak transcription	Ovary	ovary
8	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr3:43387200-43394000	Weak transcription	Small Intestine	intestine
10	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
11	chr3:43388600-43393400	Strong transcription	Muscle Satellite Cultured Cells	--
12	chr3:43389200-43400800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:43390000-43393600	Weak transcription	Hela-S3	cervix
14	chr3:43390600-43393400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:43390600-43394400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr3:43390600-43394400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:43390600-43394800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:43390600-43403600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:43390600-43406600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:43390600-43407200	Weak transcription	Gastric	stomach
21	chr3:43390800-43393400	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:43390800-43394200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:43390800-43402200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr3:43390800-43405200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr3:43391000-43394200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:43391000-43395200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:43391200-43393400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr3:43391200-43394000	Weak transcription	HMEC	breast
29	chr3:43391400-43394800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:43391400-43405400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:43391600-43393400	Strong transcription	Primary T cells from cord blood	blood
32	chr3:43391600-43393400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr3:43391600-43393400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr3:43391600-43393400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr3:43391600-43393400	Strong transcription	Fetal Thymus	thymus
36	chr3:43391600-43393400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:43391600-43393800	Weak transcription	GM12878-XiMat	blood
38	chr3:43391600-43395200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:43391600-43395200	Weak transcription	Colon Smooth Muscle	Colon
40	chr3:43391600-43395200	Weak transcription	Fetal Intestine Small	intestine
41	chr3:43391600-43396000	Weak transcription	Spleen	Spleen
42	chr3:43391600-43402000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:43391600-43404200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
45	chr3:43391800-43393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:43391800-43394600	Strong transcription	HSMM	muscle
47	chr3:43392000-43393800	Weak transcription	Brain Anterior Caudate	brain
48	chr3:43392000-43394000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:43392200-43393400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr3:43392200-43393600	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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