Variant report

Variant	rs4569634
Chromosome Location	chr3:43484307-43484308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs11129997	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.90[YRI][hapmap];0.91[AFR][1000 genomes]
rs1120779	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11713302	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	1.00[AMR][1000 genomes]
rs1395373	1.00[MEX][hapmap]
rs1472807	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2135510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	1.00[AMR][1000 genomes]
rs2372358	1.00[AMR][1000 genomes]
rs2372359	1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	1.00[AMR][1000 genomes]
rs4234429	0.81[AFR][1000 genomes]
rs4234466	1.00[AMR][1000 genomes]
rs4339089	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	1.00[AMR][1000 genomes]
rs4420837	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	1.00[AMR][1000 genomes]
rs4470482	1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	1.00[AMR][1000 genomes]
rs4682674	1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6442145	1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	1.00[AMR][1000 genomes]
rs6793755	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866841	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866848	1.00[AMR][1000 genomes]
rs73831250	1.00[EUR][1000 genomes]
rs7616072	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618790	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7620124	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7628620	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9757381	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	0.91[AFR][1000 genomes]
rs9847454	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9859465	1.00[AMR][1000 genomes]
rs9863775	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9872346	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9876963	1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43443000-43495600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:43455600-43484400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:43457000-43492800	Weak transcription	K562	blood
4	chr3:43459800-43496400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:43460800-43496400	Weak transcription	HSMM	muscle
6	chr3:43466600-43496400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:43473400-43541400	Weak transcription	Aorta	Aorta
8	chr3:43473800-43484600	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:43474200-43484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr3:43474200-43504400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:43476400-43484800	Weak transcription	HUVEC	blood vessel
12	chr3:43477600-43485400	Weak transcription	Fetal Lung	lung
13	chr3:43479400-43486200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:43480600-43496400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:43481400-43486000	Weak transcription	Ovary	ovary
16	chr3:43481400-43487200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:43481400-43487600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr3:43481800-43484800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr3:43483600-43486000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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