Variant report

Variant	rs6441771
Chromosome Location	chr3:43414318-43414319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43406367..43409402-chr3:43412255..43414681,3	K562	blood:
2	chr3:43411353..43414757-chr3:43415544..43419725,4	K562	blood:

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10084663	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129997	1.00[AFR][1000 genomes]
rs11129998	1.00[AFR][1000 genomes]
rs11130003	0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1120779	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11713302	0.94[AFR][1000 genomes]
rs12495394	0.88[AFR][1000 genomes]
rs12497714	0.82[AFR][1000 genomes]
rs12632805	0.90[YRI][hapmap]
rs1320159	0.83[AFR][1000 genomes]
rs1395373	1.00[MEX][hapmap];0.94[MKK][hapmap]
rs1472807	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs1506618	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs1996496	0.85[AFR][1000 genomes]
rs2036616	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2135510	0.88[AFR][1000 genomes]
rs2372357	0.83[AFR][1000 genomes]
rs2372358	0.83[AFR][1000 genomes]
rs2372359	0.85[AFR][1000 genomes]
rs2888311	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4234427	0.81[AFR][1000 genomes]
rs4234466	0.83[AFR][1000 genomes]
rs4339089	0.88[AFR][1000 genomes]
rs4346523	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4405884	0.83[AFR][1000 genomes]
rs4420837	0.82[AFR][1000 genomes]
rs4425230	0.83[AFR][1000 genomes]
rs4470482	0.83[AFR][1000 genomes]
rs4569634	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4642093	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4682673	0.83[AFR][1000 genomes]
rs4682674	0.83[AFR][1000 genomes]
rs4682681	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4682684	0.94[AFR][1000 genomes]
rs4682688	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4682884	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4683365	0.90[YRI][hapmap]
rs6442145	0.83[AFR][1000 genomes]
rs6766825	0.85[AFR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6775392	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs6791682	0.83[AFR][1000 genomes]
rs6793755	0.97[AFR][1000 genomes]
rs7616072	1.00[AFR][1000 genomes]
rs7618790	0.82[AFR][1000 genomes]
rs7628620	0.82[AFR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7647197	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes]
rs7648023	0.91[AFR][1000 genomes]
rs7651091	0.85[AFR][1000 genomes]
rs906156	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs906157	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes]
rs984345	0.94[AFR][1000 genomes]
rs9846341	0.94[AFR][1000 genomes]
rs9847454	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9859465	0.84[AFR][1000 genomes]
rs9863775	0.82[AFR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43391600-43436000	Weak transcription	Colonic Mucosa	Colon
2	chr3:43392200-43419600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr3:43400000-43419400	Weak transcription	Primary T cells from cord blood	blood
4	chr3:43401400-43414600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:43403000-43419400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:43403800-43414600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:43404600-43414600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:43405000-43419400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:43405400-43414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr3:43405600-43414800	Weak transcription	Osteobl	bone
11	chr3:43405800-43415000	Weak transcription	HSMM	muscle
12	chr3:43406800-43414600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:43408000-43414600	Weak transcription	Brain Anterior Caudate	brain
14	chr3:43408000-43415000	Weak transcription	Fetal Brain Female	brain
15	chr3:43408200-43414400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr3:43408200-43419200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:43408200-43419800	Weak transcription	NHLF	lung
18	chr3:43408400-43414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:43408400-43414800	Weak transcription	Right Atrium	heart
20	chr3:43408400-43415200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:43408400-43418200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:43408400-43419600	Weak transcription	Fetal Intestine Small	intestine
23	chr3:43408600-43431200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr3:43408800-43429800	Weak transcription	Right Ventricle	heart
25	chr3:43408800-43431000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr3:43409200-43414400	Weak transcription	Fetal Stomach	stomach
27	chr3:43409200-43420400	Weak transcription	HSMMtube	muscle
28	chr3:43410200-43414400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr3:43411600-43415200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:43411600-43419600	Weak transcription	Left Ventricle	heart
31	chr3:43411800-43421000	Weak transcription	Lung	lung
32	chr3:43412400-43416200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr3:43412600-43414600	Enhancers	Primary T cells fromperipheralblood	blood
34	chr3:43412600-43414800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr3:43412800-43415400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr3:43412800-43415800	Enhancers	Fetal Thymus	thymus
37	chr3:43413000-43414400	Enhancers	Thymus	Thymus
38	chr3:43413000-43415800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
39	chr3:43413000-43419400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr3:43413200-43414600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr3:43413200-43415400	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr3:43413400-43414400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr3:43413400-43414400	Weak transcription	Spleen	Spleen
44	chr3:43413400-43415400	Enhancers	H1 Cell Line	embryonic stem cell
45	chr3:43413400-43415400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:43413400-43415800	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr3:43413400-43416000	Enhancers	Fetal Muscle Trunk	muscle
48	chr3:43413400-43416200	Enhancers	Fetal Muscle Leg	muscle
49	chr3:43413600-43415600	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr3:43413600-43415800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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