Variant report

Variant	rs1120779
Chromosome Location	chr3:43322773-43322774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43318026..43323143-chr3:43324896..43329245,5	K562	blood:
2	chr3:43320796..43322949-chr3:43328990..43330664,2	K562	blood:

Variant related genes	Relation type
ENSG00000163788	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10084663	0.87[AFR][1000 genomes]
rs11129997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11129998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11130003	0.90[YRI][hapmap];0.94[AFR][1000 genomes]
rs11713302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12495394	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12497714	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12632805	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395373	1.00[MEX][hapmap];0.88[MKK][hapmap]
rs1472807	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1506618	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1996496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2036616	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2135510	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2888311	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234427	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4339089	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4346523	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4405884	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4420837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4425230	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4470482	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4569634	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4618196	1.00[AMR][1000 genomes]
rs4642093	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682673	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682674	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682681	1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682684	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682688	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682884	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682889	1.00[AMR][1000 genomes]
rs4683365	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs4683368	1.00[AMR][1000 genomes]
rs6441771	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6442145	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6765835	1.00[AMR][1000 genomes]
rs6766825	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6767741	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6784075	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6791682	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7632743	1.00[ASW][hapmap]
rs7636644	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7647197	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7648023	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906156	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906157	1.00[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906158	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs937827	1.00[ASW][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9755005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs984345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9846341	0.94[AFR][1000 genomes]
rs9859465	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752008	chr3:43285369-43360879	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1009102	chr3:43285369-43369712	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43318800-43327800	Weak transcription	Small Intestine	intestine
2	chr3:43321200-43325000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:43321600-43327000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:43322600-43324000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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