Variant report

Variant	rs6765835
Chromosome Location	chr3:43268824-43268825
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10212591	0.85[AFR][1000 genomes]
rs11129997	1.00[AMR][1000 genomes]
rs11129998	1.00[AMR][1000 genomes]
rs1120779	1.00[AMR][1000 genomes]
rs11713302	1.00[AMR][1000 genomes]
rs12632805	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1320157	1.00[AMR][1000 genomes]
rs1320159	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1472807	1.00[AMR][1000 genomes]
rs1506618	1.00[AMR][1000 genomes]
rs1996496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2135510	1.00[AMR][1000 genomes]
rs2372353	1.00[AMR][1000 genomes]
rs2372357	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372358	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2372359	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2888311	1.00[AMR][1000 genomes]
rs4234427	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4234466	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4339089	1.00[AMR][1000 genomes]
rs4346523	1.00[AMR][1000 genomes]
rs4405884	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4420837	1.00[AMR][1000 genomes]
rs4425230	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4470482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4569634	1.00[AMR][1000 genomes]
rs4642093	1.00[AMR][1000 genomes]
rs4682673	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682674	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4682681	1.00[AMR][1000 genomes]
rs4682684	1.00[AMR][1000 genomes]
rs4682884	1.00[AMR][1000 genomes]
rs4683365	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4683368	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6442145	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6766825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6775392	1.00[AMR][1000 genomes]
rs6784075	1.00[AMR][1000 genomes]
rs6791682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6793755	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7616072	1.00[AMR][1000 genomes]
rs7636644	1.00[AMR][1000 genomes]
rs7648023	1.00[AMR][1000 genomes]
rs7651091	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906156	1.00[AMR][1000 genomes]
rs906157	1.00[AMR][1000 genomes]
rs906158	1.00[AMR][1000 genomes]
rs937827	1.00[AMR][1000 genomes]
rs9755005	1.00[AMR][1000 genomes]
rs984345	1.00[AMR][1000 genomes]
rs9859465	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834672	chr3:43132722-43306272	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv965160	chr3:43264197-43270925	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43257200-43269400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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