Variant report

Variant	rs4683334
Chromosome Location	chr3:42852639-42852640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42843855..42845411-chr3:42851834..42853689,2	K562	blood:
2	chr3:42843855..42848030-chr3:42852189..42853785,3	K562	blood:

Variant related genes	Relation type
ENSG00000181061	Chromatin interaction
ENSG00000144648	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11129971	0.81[AFR][1000 genomes]
rs11129973	0.84[ASW][hapmap];0.93[LWK][hapmap];0.89[YRI][hapmap]
rs11708224	0.81[AFR][1000 genomes]
rs11720829	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes]
rs12488173	0.81[AFR][1000 genomes]
rs13062528	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1991438	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs339663	0.84[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs339669	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs339673	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs339675	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs339679	0.95[YRI][hapmap]
rs4399859	0.85[AFR][1000 genomes]
rs4404423	0.84[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs4682855	0.88[YRI][hapmap];0.84[AFR][1000 genomes]
rs5027058	0.85[AFR][1000 genomes]
rs6442065	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs6773636	0.95[YRI][hapmap]
rs6778695	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6787667	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs7610350	0.84[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes]
rs7612614	0.84[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs7612782	0.91[AFR][1000 genomes]
rs7634974	0.85[AMR][1000 genomes]
rs7648688	0.84[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];0.82[AFR][1000 genomes]
rs9755640	0.84[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs9866005	0.88[YRI][hapmap];0.84[AFR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42846800-42856400	Weak transcription	Right Atrium	heart
2	chr3:42847200-42856400	Weak transcription	NHEK	skin
3	chr3:42847400-42852800	Weak transcription	Fetal Heart	heart
4	chr3:42847400-42852800	Weak transcription	Stomach Mucosa	stomach
5	chr3:42847400-42856200	Weak transcription	Colonic Mucosa	Colon
6	chr3:42849400-42853000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:42849800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:42850800-42854200	Active TSS	Placenta	Placenta
9	chr3:42851800-42853600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:42852000-42853800	Enhancers	Fetal Intestine Small	intestine
11	chr3:42852000-42854400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:42852200-42852800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:42852200-42852800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:42852200-42853800	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:42852200-42853800	Enhancers	Fetal Intestine Large	intestine
16	chr3:42852200-42853800	Enhancers	HepG2	liver
17	chr3:42852200-42854000	Enhancers	K562	blood
18	chr3:42852200-42854200	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr3:42852400-42853200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:42852400-42853600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr3:42852400-42853800	Enhancers	Pancreas	Pancrea
22	chr3:42852600-42852800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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