Variant report

Variant	rs6778695
Chromosome Location	chr3:42851936-42851937
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:42845805..42849029-chr3:42849573..42852164,3	K562	blood:
2	chr3:42843855..42845411-chr3:42851834..42853689,2	K562	blood:

Variant related genes	Relation type
ENSG00000144648	Chromatin interaction
ENSG00000181061	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11129971	0.82[AFR][1000 genomes]
rs11129973	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11708224	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11720829	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12488173	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13062528	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1564176	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1564177	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1991438	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs339663	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs339669	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs339673	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs339675	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs339679	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35426298	0.85[AMR][1000 genomes]
rs4399859	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4404423	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4682855	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4683331	0.85[AMR][1000 genomes]
rs4683334	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs5027058	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6442065	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6773636	0.85[AMR][1000 genomes]
rs6777169	0.83[AMR][1000 genomes]
rs6787667	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7610350	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7611520	0.85[AMR][1000 genomes]
rs7612614	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7612782	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7614158	0.85[AMR][1000 genomes]
rs7648688	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9755640	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9866005	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:42846800-42856400	Weak transcription	Right Atrium	heart
2	chr3:42847000-42852200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr3:42847000-42852400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:42847200-42852000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:42847200-42852200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:42847200-42852200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr3:42847200-42852400	Weak transcription	Pancreas	Pancrea
8	chr3:42847200-42856400	Weak transcription	NHEK	skin
9	chr3:42847400-42852800	Weak transcription	Fetal Heart	heart
10	chr3:42847400-42852800	Weak transcription	Stomach Mucosa	stomach
11	chr3:42847400-42856200	Weak transcription	Colonic Mucosa	Colon
12	chr3:42847600-42852200	Weak transcription	K562	blood
13	chr3:42849000-42852200	Weak transcription	HepG2	liver
14	chr3:42849400-42853000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:42849800-42856400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:42850200-42852000	Weak transcription	Fetal Intestine Small	intestine
17	chr3:42850800-42854200	Active TSS	Placenta	Placenta
18	chr3:42851400-42852000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:42851800-42853600	Weak transcription	Placenta Amnion	Placenta Amnion

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