Variant report

Variant	rs4687959
Chromosome Location	chr3:118623414-118623415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118621808..118624756-chr3:118628385..118630071,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10934467	0.81[AFR][1000 genomes]
rs10934470	0.89[JPT][hapmap]
rs11919143	0.91[EUR][1000 genomes]
rs12491833	0.84[AFR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1369580	0.89[JPT][hapmap]
rs1369581	0.88[JPT][hapmap]
rs1369582	0.89[JPT][hapmap]
rs1435662	0.89[JPT][hapmap]
rs1435667	0.89[JPT][hapmap]
rs4687835	0.89[JPT][hapmap]
rs6438481	0.87[JPT][hapmap]
rs6773729	0.88[EUR][1000 genomes]
rs6786886	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6792805	0.93[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7613076	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7641626	0.89[JPT][hapmap]
rs9289117	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9824063	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9861978	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9872674	0.89[JPT][hapmap]
rs9878706	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118612200-118625600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:118614200-118625000	Weak transcription	Aorta	Aorta
3	chr3:118619800-118624600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:118619800-118625000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:118620200-118625400	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:118620200-118627200	Weak transcription	Fetal Brain Female	brain
8	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
9	chr3:118620400-118625200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:118621400-118624000	Strong transcription	Brain Anterior Caudate	brain
11	chr3:118621400-118626800	Weak transcription	A549	lung
12	chr3:118621800-118630200	Weak transcription	Brain Germinal Matrix	brain
13	chr3:118622000-118624800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:118622000-118644600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:118622200-118625000	Weak transcription	Ovary	ovary
16	chr3:118623000-118628800	Weak transcription	Brain Angular Gyrus	brain
17	chr3:118623400-118627200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:118623400-118627400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:118623400-118628400	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:118623400-118628400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr3:118623400-118628800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:118623400-118629200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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