Variant report

Variant	rs9878706
Chromosome Location	chr3:118659679-118659680
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10934470	0.86[JPT][hapmap]
rs11919143	0.83[EUR][1000 genomes]
rs12491833	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1369580	0.87[JPT][hapmap]
rs1369581	0.85[JPT][hapmap]
rs1369582	0.87[JPT][hapmap]
rs1435662	0.87[JPT][hapmap]
rs1435667	0.87[JPT][hapmap]
rs2160052	0.93[ASW][hapmap]
rs2866317	0.86[ASW][hapmap]
rs4687835	0.87[JPT][hapmap]
rs4687959	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6438481	0.84[JPT][hapmap]
rs6786886	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792805	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7613076	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7641626	0.87[JPT][hapmap]
rs9289117	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9824063	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9848979	0.93[ASW][hapmap]
rs9861978	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9872674	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv1010475	chr3:118657382-118789714	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
2	chr3:118645200-118661600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:118645800-118661600	Weak transcription	Left Ventricle	heart
4	chr3:118647600-118661000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:118651800-118661200	Weak transcription	Right Atrium	heart
6	chr3:118653000-118660600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:118653800-118661200	Weak transcription	Psoas Muscle	Psoas
8	chr3:118655800-118661000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:118656000-118660800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:118656000-118661200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr3:118657600-118661200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:118657800-118660200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:118657800-118660200	Weak transcription	K562	blood
14	chr3:118657800-118660400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr3:118657800-118660600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr3:118657800-118661200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr3:118658000-118668400	Weak transcription	A549	lung
18	chr3:118659000-118661000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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