Variant report

Variant	rs9824063
Chromosome Location	chr3:118633169-118633170
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11919143	0.87[EUR][1000 genomes]
rs12491833	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4687959	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6773729	0.83[EUR][1000 genomes]
rs6786886	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6792805	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7613076	0.85[ASN][1000 genomes]
rs9289117	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9861978	0.87[ASN][1000 genomes]
rs9878706	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
3	chr3:118622000-118644600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:118625400-118639800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:118627800-118642200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr3:118630000-118641600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:118631800-118639600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:118631800-118639600	Weak transcription	Ovary	ovary
9	chr3:118632600-118633400	Active TSS	ES-I3 Cell Line	embryonic stem cell
10	chr3:118632800-118633400	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:118633000-118633200	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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