Variant report
| Variant | rs4692099 |
|---|---|
| Chromosome Location | chr4:30561313-30561314 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10022517 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10022700 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10022781 | 0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10939306 | 0.83[AMR][1000 genomes] |
| rs10939307 | 0.83[AMR][1000 genomes] |
| rs11736740 | 0.83[AMR][1000 genomes] |
| rs12374222 | 0.83[AMR][1000 genomes] |
| rs12644682 | 0.83[AMR][1000 genomes] |
| rs16883749 | 0.85[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs16883825 | 0.87[AMR][1000 genomes] |
| rs1877405 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1976116 | 0.83[AMR][1000 genomes] |
| rs2046539 | 0.83[AMR][1000 genomes] |
| rs4257619 | 0.85[AMR][1000 genomes] |
| rs4494994 | 0.83[AMR][1000 genomes] |
| rs4588422 | 0.83[AMR][1000 genomes] |
| rs4692472 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6826881 | 0.85[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6826998 | 0.85[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6830613 | 0.95[EUR][1000 genomes] |
| rs6844757 | 0.83[AMR][1000 genomes] |
| rs6845505 | 0.83[AMR][1000 genomes] |
| rs6846798 | 0.85[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6854665 | 0.85[AFR][1000 genomes];0.95[EUR][1000 genomes] |
| rs720393 | 0.83[AMR][1000 genomes] |
| rs72493513 | 0.87[AMR][1000 genomes] |
| rs73213108 | 0.87[AMR][1000 genomes] |
| rs73213110 | 0.87[AMR][1000 genomes] |
| rs73213111 | 0.87[AMR][1000 genomes] |
| rs73213116 | 0.83[AMR][1000 genomes] |
| rs73213117 | 0.83[AMR][1000 genomes] |
| rs73228268 | 0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73228270 | 0.95[EUR][1000 genomes] |
| rs73228300 | 0.87[AMR][1000 genomes] |
| rs73228301 | 0.87[AMR][1000 genomes] |
| rs73228302 | 0.87[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461315 | chr4:30348053-30658535 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv593898 | chr4:30348053-30658535 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30561000-30561800 | Enhancers | Fetal Lung | lung |
