Variant report

Variant	rs16883749
Chromosome Location	chr4:30538760-30538761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10022517	0.93[EUR][1000 genomes]
rs10022700	0.93[EUR][1000 genomes]
rs10022781	0.93[EUR][1000 genomes]
rs1877405	0.95[EUR][1000 genomes]
rs4692091	0.81[EUR][1000 genomes]
rs4692099	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4692472	0.95[EUR][1000 genomes]
rs6826881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6826998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6830613	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6846798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6854665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73216862	0.81[EUR][1000 genomes]
rs73228255	0.82[EUR][1000 genomes]
rs73228256	0.82[EUR][1000 genomes]
rs73228268	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73228270	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs907512	0.81[EUR][1000 genomes]
rs954275	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30536800-30540000	Enhancers	HUVEC	blood vessel
2	chr4:30537400-30539400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:30538000-30539000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:30538200-30539000	Weak transcription	HSMM	muscle
5	chr4:30538400-30539000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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