Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10022517	0.93[EUR][1000 genomes]
rs10022700	0.93[EUR][1000 genomes]
rs10022781	0.93[EUR][1000 genomes]
rs12642409	0.83[AMR][1000 genomes]
rs16883749	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1877405	0.95[EUR][1000 genomes]
rs4692091	0.81[EUR][1000 genomes]
rs4692099	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4692472	0.95[EUR][1000 genomes]
rs6826881	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826998	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6830613	0.99[EUR][1000 genomes]
rs6846798	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6854665	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73216862	0.81[EUR][1000 genomes]
rs73228255	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73228256	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73228270	1.00[EUR][1000 genomes]
rs907512	0.81[EUR][1000 genomes]
rs954275	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30539000-30540600	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:30539200-30540600	Weak transcription	HSMM	muscle
3	chr4:30539800-30541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search: