Variant report

Variant	rs954275
Chromosome Location	chr4:30529768-30529769
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12642409	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1553922	0.85[EUR][1000 genomes]
rs1553923	0.85[EUR][1000 genomes]
rs16883749	0.82[EUR][1000 genomes]
rs4692091	0.97[EUR][1000 genomes]
rs4692461	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6826881	0.82[EUR][1000 genomes]
rs6826998	0.82[EUR][1000 genomes]
rs6830613	0.81[EUR][1000 genomes]
rs6846798	0.82[EUR][1000 genomes]
rs6854665	0.82[EUR][1000 genomes]
rs73216839	0.85[EUR][1000 genomes]
rs73216859	0.91[EUR][1000 genomes]
rs73216862	0.97[EUR][1000 genomes]
rs73228255	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228256	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73228268	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73228270	0.82[EUR][1000 genomes]
rs907512	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv522200	chr4:30524108-30536779	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30528400-30530400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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