Variant report
| Variant | rs73216862 |
|---|---|
| Chromosome Location | chr4:30501507-30501508 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12642409 | 0.97[EUR][1000 genomes] |
| rs1553922 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1553923 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs16883749 | 0.81[EUR][1000 genomes] |
| rs28578242 | 0.84[ASN][1000 genomes] |
| rs4692091 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4692461 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6826881 | 0.81[EUR][1000 genomes] |
| rs6826998 | 0.81[EUR][1000 genomes] |
| rs6830613 | 0.80[EUR][1000 genomes] |
| rs6846798 | 0.81[EUR][1000 genomes] |
| rs6854665 | 0.81[EUR][1000 genomes] |
| rs73216839 | 0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73216859 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73228255 | 0.99[EUR][1000 genomes] |
| rs73228256 | 0.99[EUR][1000 genomes] |
| rs73228268 | 0.81[EUR][1000 genomes] |
| rs73228270 | 0.81[EUR][1000 genomes] |
| rs907512 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs954275 | 0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv461315 | chr4:30348053-30658535 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv593898 | chr4:30348053-30658535 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv878806 | chr4:30432141-30508931 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv878807 | chr4:30437096-30508931 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:30499600-30501800 | Weak transcription | Fetal Muscle Leg | muscle |
