Variant report

Variant	rs73216839
Chromosome Location	chr4:30475655-30475656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12642409	0.85[EUR][1000 genomes]
rs1553922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1553923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28578242	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4692091	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4692461	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73216859	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73216862	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73228255	0.86[EUR][1000 genomes]
rs73228256	0.86[EUR][1000 genomes]
rs907512	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs954275	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461315	chr4:30348053-30658535	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv593898	chr4:30348053-30658535	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv878806	chr4:30432141-30508931	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv878807	chr4:30437096-30508931	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv1001097	chr4:30466919-30477116	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:30475600-30476200	Enhancers	Brain Hippocampus Middle	brain
2	chr4:30475600-30477200	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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