Variant report

Variant	rs4695819
Chromosome Location	chr4:173901956-173901957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs35632075	1.00[EUR][1000 genomes]
rs4235217	0.82[ASW][hapmap];1.00[MKK][hapmap]
rs4289425	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4470608	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs4563475	1.00[LWK][hapmap];0.91[MKK][hapmap];0.81[YRI][hapmap];0.94[AFR][1000 genomes]
rs6856865	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173898000-173904200	Enhancers	Hela-S3	cervix
2	chr4:173898800-173902800	Weak transcription	HMEC	breast
3	chr4:173900400-173903400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:173901000-173903000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:173901200-173903600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:173901200-173904000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:173901800-173902000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr4:173901800-173903200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:173901800-173903200	Weak transcription	Stomach Mucosa	stomach
10	chr4:173901800-173903200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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