Variant report

Variant	rs6856865
Chromosome Location	chr4:173903893-173903894
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2610187	1.00[AMR][1000 genomes]
rs2610189	1.00[AMR][1000 genomes]
rs2610190	1.00[AMR][1000 genomes]
rs2610192	1.00[AMR][1000 genomes]
rs2610193	1.00[AMR][1000 genomes]
rs2610197	1.00[AMR][1000 genomes]
rs2653823	1.00[AMR][1000 genomes]
rs2653842	1.00[AMR][1000 genomes]
rs4289425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4470608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4563475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4695819	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173898000-173904200	Enhancers	Hela-S3	cervix
2	chr4:173901200-173904000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:173902600-173904000	Weak transcription	Esophagus	oesophagus
4	chr4:173902600-173904400	Enhancers	NHEK	skin
5	chr4:173902800-173904600	Enhancers	HMEC	breast
6	chr4:173903000-173904200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:173903000-173904200	Enhancers	HUVEC	blood vessel
8	chr4:173903200-173904000	Enhancers	NH-A	brain
9	chr4:173903200-173904200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:173903200-173904200	Enhancers	Stomach Mucosa	stomach
11	chr4:173903200-173904200	Enhancers	A549	lung
12	chr4:173903200-173904200	Enhancers	Osteobl	bone
13	chr4:173903200-173904400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:173903200-173904600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:173903200-173904600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:173903400-173904000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:173903400-173904000	Enhancers	HSMMtube	muscle
18	chr4:173903400-173904200	Enhancers	HSMM	muscle
19	chr4:173903400-173904600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:173903400-173905600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:173903600-173904200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:173903800-173905000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:173903800-173905000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:173903800-173905200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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