Variant report

Variant	rs2610187
Chromosome Location	chr4:173855663-173855664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2610189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610193	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610197	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610202	1.00[YRI][hapmap]
rs2653823	1.00[AMR][1000 genomes]
rs2653827	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs2653835	0.89[YRI][hapmap]
rs2653842	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3105223	1.00[YRI][hapmap]
rs4235217	0.82[ASW][hapmap]
rs4289425	1.00[AMR][1000 genomes]
rs4470608	1.00[AMR][1000 genomes]
rs4563475	1.00[AMR][1000 genomes]
rs6856865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173853800-173872400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:173855600-173856000	Enhancers	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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