Variant report

Variant	rs4289425
Chromosome Location	chr4:173910548-173910549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2610187	1.00[AMR][1000 genomes]
rs2610189	1.00[AMR][1000 genomes]
rs2610190	1.00[AMR][1000 genomes]
rs2610192	1.00[AMR][1000 genomes]
rs2610193	1.00[AMR][1000 genomes]
rs2610197	1.00[AMR][1000 genomes]
rs2653823	1.00[AMR][1000 genomes]
rs2653826	0.81[YRI][hapmap]
rs2653842	1.00[AMR][1000 genomes]
rs4470608	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4563475	0.81[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4695819	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs6856865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173903800-173918000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:173904200-173935200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:173907400-173913200	Weak transcription	Hela-S3	cervix
4	chr4:173907600-173911200	Weak transcription	HUVEC	blood vessel
5	chr4:173907800-173917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:173909800-173911400	Enhancers	Fetal Intestine Large	intestine
7	chr4:173910000-173910800	Enhancers	Small Intestine	intestine
8	chr4:173910200-173911800	Enhancers	Fetal Intestine Small	intestine
9	chr4:173910200-173916200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:173910400-173911200	Weak transcription	Colonic Mucosa	Colon
11	chr4:173910400-173920200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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