Variant report

Variant	rs2653823
Chromosome Location	chr4:173819711-173819712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2610187	1.00[AMR][1000 genomes]
rs2610189	1.00[AMR][1000 genomes]
rs2610190	1.00[AMR][1000 genomes]
rs2610192	1.00[AMR][1000 genomes]
rs2610193	1.00[AMR][1000 genomes]
rs2610197	1.00[AMR][1000 genomes]
rs2653835	0.80[YRI][hapmap]
rs2653842	1.00[AMR][1000 genomes]
rs4289425	1.00[AMR][1000 genomes]
rs4470608	1.00[AMR][1000 genomes]
rs4563475	1.00[AMR][1000 genomes]
rs4695820	1.00[YRI][hapmap]
rs6856865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv881394	chr4:173757115-173847405	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173818600-173820200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:173819000-173820000	Weak transcription	Placenta	Placenta
3	chr4:173819600-173821200	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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