Variant report

Variant	rs2610192
Chromosome Location	chr4:173862384-173862385
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2610187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610193	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2610197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2653823	1.00[AMR][1000 genomes]
rs2653842	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4289425	1.00[AMR][1000 genomes]
rs4470608	1.00[AMR][1000 genomes]
rs4563475	1.00[AMR][1000 genomes]
rs6856865	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173853800-173872400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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