Variant report
| Variant | rs2653827 |
|---|---|
| Chromosome Location | chr4:173828093-173828094 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:173825247..173827000-chr4:173827784..173829718,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs2610187 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2610189 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2610190 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2610192 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2610193 | 1.00[AMR][1000 genomes] |
| rs2610197 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2610202 | 1.00[YRI][hapmap] |
| rs2653823 | 1.00[AMR][1000 genomes] |
| rs2653835 | 0.89[YRI][hapmap] |
| rs2653842 | 1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs3105223 | 1.00[YRI][hapmap] |
| rs4235217 | 0.82[ASW][hapmap] |
| rs4289425 | 1.00[AMR][1000 genomes] |
| rs4470608 | 1.00[AMR][1000 genomes] |
| rs4563475 | 1.00[AMR][1000 genomes] |
| rs6856865 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948856 | chr4:173388217-173967546 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv949126 | chr4:173466221-174051451 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv881394 | chr4:173757115-173847405 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
