Variant report

Variant	rs4698931
Chromosome Location	chr4:106034478-106034479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10470983	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10856976	1.00[JPT][hapmap]
rs1156440	0.84[CHD][hapmap];0.87[GIH][hapmap]
rs12509636	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17429675	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17429682	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2214409	0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs4699153	1.00[JPT][hapmap]
rs4699154	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4699156	0.97[ASN][1000 genomes]
rs6813396	0.87[GIH][hapmap]
rs7654896	0.84[CHD][hapmap];0.82[GIH][hapmap];0.81[LWK][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106032600-106038000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:106032600-106038400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:106032800-106034600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:106033000-106035800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:106033000-106036800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:106033400-106036200	Enhancers	Primary hematopoietic stem cells	blood
7	chr4:106033600-106036400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:106033600-106037000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:106034200-106035400	Enhancers	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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