Variant report

Variant	rs4699153
Chromosome Location	chr4:106023508-106023509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr4:106023196-106023533	IMR90	lung:	n/a	chr4:106023358-106023369 chr4:106023360-106023369 chr4:106023394-106023405
2	CEBPB	chr4:106023209-106023538	HepG2	liver:	n/a	chr4:106023358-106023369 chr4:106023360-106023369 chr4:106023394-106023405
3	CEBPB	chr4:106023220-106023511	Hela-S3	cervix:	n/a	chr4:106023358-106023369 chr4:106023360-106023369 chr4:106023394-106023405

No.	Distal block	Cell Line	Cell type
1	chr4:106022079..106026589-chr4:106064672..106069140,4	MCF-7	breast:
2	chr4:106022926..106025041-chr4:106035564..106037106,2	MCF-7	breast:
3	chr4:106017219..106019280-chr4:106021884..106024669,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252136	TF binding region
ENSG00000168769	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10856976	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1156440	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11722422	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs11736838	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12509636	1.00[JPT][hapmap]
rs12643081	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17429675	1.00[JPT][hapmap]
rs17429682	1.00[JPT][hapmap]
rs1971640	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2214406	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2214409	1.00[JPT][hapmap]
rs4698931	1.00[JPT][hapmap]
rs4699152	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs56704181	0.81[EUR][1000 genomes]
rs6811919	1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6813396	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6820799	0.87[EUR][1000 genomes]
rs764275	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7654896	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs968042	0.85[EUR][1000 genomes]
rs9994426	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9996395	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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