Variant report

Variant	rs4699927
Chromosome Location	chr5:57771103-57771104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10076546	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10471452	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs15009	0.87[ASN][1000 genomes]
rs1508918	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1508919	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2216691	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2662619	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4700293	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7723549	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7726165	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7729581	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7729588	0.88[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7730200	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4699927	GAPT	cis	Whole Blood	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57770200-57772400	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr5:57770600-57771600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:57770800-57771400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:57771000-57771400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
5	chr5:57771000-57771400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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