Variant report

Variant	rs4700293
Chromosome Location	chr5:57773447-57773448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10076546	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10471452	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs15009	0.91[CHB][hapmap];0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs1508918	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1508919	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2216691	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2662619	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4699927	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7723549	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7726165	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7729581	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7729588	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7730200	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4700293	GAPT	cis	Whole Blood	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57771400-57777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:57771600-57774200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:57772400-57774400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:57772600-57774200	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr5:57772800-57773600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:57772800-57774400	Enhancers	Primary B cells from peripheral blood	blood
7	chr5:57773000-57773600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:57773000-57774200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:57773400-57773800	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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