Variant report

Variant	rs4708886
Chromosome Location	chr6:161206350-161206351
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10455783	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10455784	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1084653	0.81[ASN][1000 genomes]
rs11756055	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11758404	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12194271	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12206847	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12214254	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1247559	0.90[ASN][1000 genomes]
rs1247560	0.90[ASN][1000 genomes]
rs1247564	0.90[ASN][1000 genomes]
rs1247565	0.90[ASN][1000 genomes]
rs1247567	0.87[ASN][1000 genomes]
rs12526591	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1271391	0.89[ASN][1000 genomes]
rs13192114	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13192211	0.82[ASN][1000 genomes]
rs13202192	0.85[EUR][1000 genomes]
rs13203571	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13206066	0.86[EUR][1000 genomes]
rs13216458	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1344729	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1344730	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1344731	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1358755	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1367216	0.87[ASN][1000 genomes]
rs1549741	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1590185	0.86[EUR][1000 genomes]
rs1611873	0.87[ASN][1000 genomes]
rs1620969	0.89[ASN][1000 genomes]
rs1652481	0.89[ASN][1000 genomes]
rs1652498	0.89[ASN][1000 genomes]
rs1652501	0.89[ASN][1000 genomes]
rs1740445	0.89[ASN][1000 genomes]
rs1740447	0.86[ASN][1000 genomes]
rs1782627	0.89[ASN][1000 genomes]
rs1782628	0.88[ASN][1000 genomes]
rs1782629	0.88[ASN][1000 genomes]
rs1835344	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1853022	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1965092	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1991598	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1991599	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2115869	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2115870	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2115871	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2144727	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2465835	0.85[ASN][1000 genomes]
rs2465836	0.85[ASN][1000 genomes]
rs28408689	0.82[EUR][1000 genomes]
rs34797199	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4440440	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4708878	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708881	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708882	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708884	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4708887	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4708888	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4708889	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4708891	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4708892	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4708893	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4709466	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4709467	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4709469	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4709470	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66496533	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7450979	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7454268	0.87[EUR][1000 genomes]
rs9456586	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9456587	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9456588	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9456589	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9456590	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9456592	0.84[EUR][1000 genomes]
rs9458023	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9458025	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9458026	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9458029	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9458030	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9458031	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9458035	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9458036	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458039	0.86[EUR][1000 genomes]
rs9458040	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv981309	chr6:161193505-161211503	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161204000-161207800	Weak transcription	K562	blood

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