Variant report

Variant	rs7454268
Chromosome Location	chr6:161166502-161166503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10455783	0.82[EUR][1000 genomes]
rs10455784	0.82[EUR][1000 genomes]
rs1084659	0.80[EUR][1000 genomes]
rs11758404	0.81[EUR][1000 genomes]
rs12194271	0.88[EUR][1000 genomes]
rs12214254	0.88[EUR][1000 genomes]
rs12526591	0.85[EUR][1000 genomes]
rs13203571	0.82[EUR][1000 genomes]
rs13206066	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13216458	0.84[EUR][1000 genomes]
rs1344729	0.85[EUR][1000 genomes]
rs1344730	0.87[EUR][1000 genomes]
rs1344731	0.85[EUR][1000 genomes]
rs1358755	0.81[EUR][1000 genomes]
rs1549741	0.85[EUR][1000 genomes]
rs1590185	0.80[EUR][1000 genomes]
rs1853022	0.80[EUR][1000 genomes]
rs1965092	0.85[EUR][1000 genomes]
rs1991598	0.85[EUR][1000 genomes]
rs1991599	0.80[EUR][1000 genomes]
rs2115869	0.84[EUR][1000 genomes]
rs2115870	0.83[EUR][1000 genomes]
rs2115871	0.84[EUR][1000 genomes]
rs2144727	0.88[EUR][1000 genomes]
rs2465835	0.86[CHB][hapmap]
rs2465836	0.85[CHB][hapmap]
rs2859879	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs34797199	0.85[EUR][1000 genomes]
rs3757017	0.87[CHB][hapmap]
rs4440440	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4708878	0.85[EUR][1000 genomes]
rs4708881	0.85[EUR][1000 genomes]
rs4708882	0.85[EUR][1000 genomes]
rs4708884	0.84[EUR][1000 genomes]
rs4708886	0.87[EUR][1000 genomes]
rs4708887	0.84[EUR][1000 genomes]
rs4708888	0.85[EUR][1000 genomes]
rs4708889	0.82[EUR][1000 genomes]
rs4708891	0.82[EUR][1000 genomes]
rs4708892	0.82[EUR][1000 genomes]
rs4708893	0.83[EUR][1000 genomes]
rs4709466	0.85[EUR][1000 genomes]
rs4709467	0.85[EUR][1000 genomes]
rs4709469	0.85[EUR][1000 genomes]
rs4709470	0.80[EUR][1000 genomes]
rs66496533	0.82[EUR][1000 genomes]
rs7450979	0.92[CEU][hapmap];0.95[CHB][hapmap];0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs783176	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs9456586	0.83[EUR][1000 genomes]
rs9456587	0.81[EUR][1000 genomes]
rs9456588	0.81[EUR][1000 genomes]
rs9456589	0.81[EUR][1000 genomes]
rs9456590	0.80[EUR][1000 genomes]
rs9458023	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9458025	0.85[EUR][1000 genomes]
rs9458026	0.85[EUR][1000 genomes]
rs9458030	0.84[EUR][1000 genomes]
rs9458031	0.83[EUR][1000 genomes]
rs9458035	0.82[EUR][1000 genomes]
rs9458036	0.81[EUR][1000 genomes]
rs9458039	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv522773	chr6:161152449-161170835	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv522424	chr6:161162406-161170835	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161140800-161175200	Strong transcription	Liver	Liver
2	chr6:161165200-161167400	ZNF genes & repeats	GM12878-XiMat	blood

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