Variant report

Variant	rs9456592
Chromosome Location	chr6:161231592-161231593
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161227565..161229491-chr6:161229972..161232150,2	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10455783	0.82[EUR][1000 genomes]
rs10455784	0.82[EUR][1000 genomes]
rs11756055	0.89[EUR][1000 genomes]
rs11758404	0.90[EUR][1000 genomes]
rs12194271	0.84[EUR][1000 genomes]
rs12214254	0.84[EUR][1000 genomes]
rs12526591	0.83[EUR][1000 genomes]
rs13202192	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203571	0.83[EUR][1000 genomes]
rs13216458	0.83[EUR][1000 genomes]
rs1344729	0.83[EUR][1000 genomes]
rs1344730	0.85[EUR][1000 genomes]
rs1344731	0.83[EUR][1000 genomes]
rs1358755	0.93[EUR][1000 genomes]
rs1549741	0.83[EUR][1000 genomes]
rs1590185	0.97[EUR][1000 genomes]
rs1835344	0.95[EUR][1000 genomes]
rs1853022	0.93[EUR][1000 genomes]
rs1965092	0.83[EUR][1000 genomes]
rs1991598	0.83[EUR][1000 genomes]
rs2115869	0.84[EUR][1000 genomes]
rs2115870	0.84[EUR][1000 genomes]
rs2115871	0.84[EUR][1000 genomes]
rs2144727	0.84[EUR][1000 genomes]
rs28408689	0.86[EUR][1000 genomes]
rs34797199	0.83[EUR][1000 genomes]
rs4440440	0.82[EUR][1000 genomes]
rs4708878	0.83[EUR][1000 genomes]
rs4708881	0.83[EUR][1000 genomes]
rs4708882	0.83[EUR][1000 genomes]
rs4708884	0.83[EUR][1000 genomes]
rs4708886	0.84[EUR][1000 genomes]
rs4708887	0.83[EUR][1000 genomes]
rs4708888	0.83[EUR][1000 genomes]
rs4708889	0.83[EUR][1000 genomes]
rs4708891	0.83[EUR][1000 genomes]
rs4708892	0.83[EUR][1000 genomes]
rs4708893	0.84[EUR][1000 genomes]
rs4709466	0.83[EUR][1000 genomes]
rs4709467	0.83[EUR][1000 genomes]
rs4709469	0.83[EUR][1000 genomes]
rs4709470	0.93[EUR][1000 genomes]
rs66496533	0.91[EUR][1000 genomes]
rs7450979	0.84[EUR][1000 genomes]
rs783157	0.92[ASN][1000 genomes]
rs9355840	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9456586	0.84[EUR][1000 genomes]
rs9456587	0.91[EUR][1000 genomes]
rs9456588	0.93[EUR][1000 genomes]
rs9456589	0.93[EUR][1000 genomes]
rs9456590	0.93[EUR][1000 genomes]
rs9458023	0.82[EUR][1000 genomes]
rs9458025	0.83[EUR][1000 genomes]
rs9458026	0.83[EUR][1000 genomes]
rs9458030	0.84[EUR][1000 genomes]
rs9458031	0.84[EUR][1000 genomes]
rs9458035	0.91[EUR][1000 genomes]
rs9458036	0.93[EUR][1000 genomes]
rs9458039	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9458040	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv886815	chr6:161213047-161258658	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv886816	chr6:161225303-161286450	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv521351	chr6:161230801-161260530	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv1832769	chr6:161231177-161246303	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1827618	chr6:161231592-161246303	Active TSS Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161231200-161231600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:161231200-161231800	Enhancers	HepG2	liver
3	chr6:161231400-161231800	Active TSS	A549	lung
4	chr6:161231400-161233000	Weak transcription	GM12878-XiMat	blood

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