Variant report

Variant	rs4711343
Chromosome Location	chr6:33714548-33714549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33712629..33714583-chr6:33734231..33736589,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1014933	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10947430	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10947434	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10947435	0.90[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11759396	0.81[JPT][hapmap]
rs1555965	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2147656	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2147657	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2229642	0.81[JPT][hapmap]
rs2274458	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2281829	0.90[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296738	0.83[AMR][1000 genomes]
rs2296739	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2296741	0.82[AMR][1000 genomes]
rs2296742	0.81[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs28651968	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966	0.90[ASW][hapmap];0.90[CHB][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3227	0.90[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3818521	1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818523	0.81[JPT][hapmap]
rs3818524	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3818527	0.90[ASW][hapmap];0.90[CHB][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3818530	1.00[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4304152	0.81[ASN][1000 genomes]
rs4711336	0.89[ASW][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes]
rs4711338	0.81[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs4711339	0.90[ASW][hapmap];0.90[CHB][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4711340	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4713655	0.87[AMR][1000 genomes]
rs4713658	0.81[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs4713659	0.90[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.81[GIH][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713660	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4713661	0.90[CHB][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713662	0.90[CHB][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713663	0.82[AFR][1000 genomes]
rs4713665	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4713666	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4713667	0.90[CHB][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4713669	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4713670	0.90[ASW][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713671	0.90[ASW][hapmap];0.88[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4713672	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713674	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713675	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs509539	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs542441	0.81[JPT][hapmap]
rs560111	0.96[CEU][hapmap];0.81[CHB][hapmap];0.86[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60704560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs622917	0.85[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap]
rs626156	0.81[JPT][hapmap]
rs6457739	0.90[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.98[TSI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6904816	1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6916949	0.90[CHB][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6917140	1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6919321	1.00[JPT][hapmap]
rs6928010	0.81[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6938056	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs749338	0.89[TSI][hapmap];0.83[AMR][1000 genomes]
rs749847	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs753890	0.84[AMR][1000 genomes]
rs7739505	0.90[CHB][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7759668	0.90[ASW][hapmap];0.90[CHB][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7770465	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs791902	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs791903	0.81[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9348924	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9348925	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9366828	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9368773	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9368776	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9380375	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9394163	0.90[ASW][hapmap];0.90[CHB][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs942640	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs942641	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs942643	0.81[ASW][hapmap];0.90[CHB][hapmap];0.86[MEX][hapmap];0.98[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9469566	0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469583	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33706600-33715800	Enhancers	Fetal Intestine Large	intestine
2	chr6:33710600-33715200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:33710800-33716600	Active TSS	Psoas Muscle	Psoas
4	chr6:33711200-33715600	Enhancers	Fetal Intestine Small	intestine
5	chr6:33711800-33714600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:33711800-33714600	Enhancers	NHEK	skin
7	chr6:33711800-33715000	Active TSS	Left Ventricle	heart
8	chr6:33711800-33715200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:33711800-33715600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:33711800-33715800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:33712000-33714600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:33712000-33714600	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:33712000-33715000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:33712000-33715400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr6:33712000-33717000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:33712000-33717800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:33712200-33714800	Enhancers	Fetal Stomach	stomach
18	chr6:33712200-33714800	Active TSS	Right Atrium	heart
19	chr6:33712200-33715200	Enhancers	NHLF	lung
20	chr6:33712400-33714600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:33712400-33714800	Active TSS	Right Ventricle	heart
22	chr6:33712400-33714800	Enhancers	A549	lung
23	chr6:33712400-33715000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr6:33712400-33715000	Active TSS	Brain Hippocampus Middle	brain
25	chr6:33712400-33715000	Active TSS	Brain Substantia Nigra	brain
26	chr6:33712400-33715600	Enhancers	Duodenum Mucosa	Duodenum
27	chr6:33712400-33719600	Weak transcription	Gastric	stomach
28	chr6:33712600-33714800	Active TSS	HSMM	muscle
29	chr6:33712600-33714800	Active TSS	HSMMtube	muscle
30	chr6:33712600-33715000	Active TSS	Brain Angular Gyrus	brain
31	chr6:33712800-33714800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:33712800-33715000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:33712800-33715000	Flanking Active TSS	Fetal Muscle Leg	muscle
34	chr6:33712800-33715200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:33712800-33715200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
36	chr6:33712800-33715600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr6:33713000-33714800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:33713000-33715000	Enhancers	HMEC	breast
39	chr6:33713200-33715200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:33713200-33715200	Enhancers	Fetal Heart	heart
41	chr6:33713400-33714600	Enhancers	Fetal Thymus	thymus
42	chr6:33713400-33714600	Enhancers	NH-A	brain
43	chr6:33713400-33715000	Active TSS	Brain Anterior Caudate	brain
44	chr6:33713400-33715000	Active TSS	Brain Cingulate Gyrus	brain
45	chr6:33713400-33715000	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr6:33713400-33715000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:33713600-33714600	Flanking Bivalent TSS/Enh	HepG2	liver
48	chr6:33713600-33714800	Flanking Active TSS	Liver	Liver
49	chr6:33713800-33714600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:33713800-33714600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links