Variant report

Variant	rs4713672
Chromosome Location	chr6:33705066-33705067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33704352..33707039-chr6:33718768..33721610,2	MCF-7	breast:
2	chr6:33704170..33706170-chr6:33708932..33711756,3	MCF-7	breast:
3	chr6:33704170..33706056-chr6:33712043..33713593,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1014933	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10947430	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10947434	0.81[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10947435	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11759396	0.82[JPT][hapmap]
rs1555965	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2147656	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2147657	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2229642	0.82[JPT][hapmap]
rs2274458	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2281829	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2296738	0.80[AMR][1000 genomes]
rs2296739	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2296742	0.81[JPT][hapmap]
rs28651968	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2966	0.80[CHB][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3227	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818521	0.83[CHB][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818523	0.82[JPT][hapmap]
rs3818524	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3818527	0.80[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3818530	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4711336	0.81[JPT][hapmap]
rs4711338	0.81[JPT][hapmap]
rs4711339	0.80[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4711340	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4711343	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4713655	0.85[AMR][1000 genomes]
rs4713658	0.81[JPT][hapmap]
rs4713659	0.81[CEU][hapmap];0.90[CHB][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4713660	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4713661	0.80[CEU][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713662	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4713663	0.81[AFR][1000 genomes]
rs4713665	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4713666	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4713667	0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4713669	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713670	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713671	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4713675	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs509539	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs542441	0.81[JPT][hapmap]
rs560111	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60704560	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs622917	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs626156	0.81[JPT][hapmap]
rs6457739	0.81[CEU][hapmap];0.90[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6904816	0.81[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6916949	0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6917140	0.82[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6919321	1.00[JPT][hapmap]
rs6928010	0.81[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6938056	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs749338	0.81[AMR][1000 genomes]
rs749847	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs753890	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7739505	0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7759668	0.80[CHB][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7770465	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs791902	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs791903	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9348924	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9348925	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9366828	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9368773	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9368776	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9380375	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9394163	0.80[CHB][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs942640	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs942641	0.91[JPT][hapmap]
rs942643	0.80[CHB][hapmap];0.84[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469566	0.81[CEU][hapmap];0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469583	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33686400-33710600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:33690800-33708200	Weak transcription	Gastric	stomach
3	chr6:33691800-33711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:33692000-33706800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:33692000-33710200	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:33693600-33712000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:33694000-33710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:33695600-33711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr6:33699200-33710000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:33699800-33708000	Weak transcription	Fetal Lung	lung
11	chr6:33700200-33706600	Weak transcription	Fetal Intestine Large	intestine
12	chr6:33700400-33707400	Weak transcription	Lung	lung
13	chr6:33700600-33705200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:33700600-33707200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:33701000-33705400	Weak transcription	Liver	Liver
16	chr6:33702000-33710000	Genic enhancers	HSMM	muscle
17	chr6:33702200-33706200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:33703400-33705200	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:33703400-33705800	Weak transcription	Psoas Muscle	Psoas
20	chr6:33703400-33706800	Weak transcription	Spleen	Spleen
21	chr6:33704400-33705400	Enhancers	Left Ventricle	heart
22	chr6:33704400-33707800	Strong transcription	Muscle Satellite Cultured Cells	--
23	chr6:33704600-33705200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:33704600-33705400	Enhancers	Placenta Amnion	Placenta Amnion
25	chr6:33704600-33705600	Strong transcription	Placenta	Placenta
26	chr6:33704600-33705600	Enhancers	Right Atrium	heart
27	chr6:33704600-33706200	Genic enhancers	Fetal Muscle Trunk	muscle
28	chr6:33704600-33706200	Genic enhancers	Fetal Muscle Leg	muscle
29	chr6:33704600-33706200	Enhancers	Right Ventricle	heart
30	chr6:33704600-33706600	Genic enhancers	Brain Substantia Nigra	brain
31	chr6:33704800-33705400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:33704800-33705800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:33704800-33706400	Enhancers	Fetal Heart	heart
34	chr6:33704800-33706800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:33704800-33707000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:33705000-33705200	Weak transcription	HSMMtube	muscle
37	chr6:33705000-33705400	Enhancers	Brain Anterior Caudate	brain
38	chr6:33705000-33705400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:33705000-33705600	Enhancers	Brain Angular Gyrus	brain
40	chr6:33705000-33705600	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr6:33705000-33705800	Enhancers	Brain Cingulate Gyrus	brain
42	chr6:33705000-33706400	Enhancers	Pancreas	Pancrea

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