Variant report

Variant	rs4712092
Chromosome Location	chr6:54974168-54974169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54710928..54713066-chr6:54974094..54976437,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10948881	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12191770	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4296890	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4454122	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4484524	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4492195	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4518494	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4563716	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4571554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4601130	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4601131	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4636027	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4712089	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4712094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715504	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56217917	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56776090	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918018	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6920563	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7746448	0.85[ASN][1000 genomes]
rs7753352	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7760318	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9357840	0.87[CHB][hapmap]
rs9367608	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9370373	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9382434	0.81[ASN][1000 genomes]
rs9382442	0.85[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9396032	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9396036	0.86[CHB][hapmap]
rs9464180	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9464190	0.83[YRI][hapmap]
rs9475127	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54972800-54974800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:54973000-54974200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:54973600-54974200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:54973600-54974200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:54973800-54974800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:54974000-54974400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:54974000-54974400	Enhancers	HUES48 Cell Line	embryonic stem cell

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