Variant report

Variant	rs56776090
Chromosome Location	chr6:54974009-54974010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11966562	0.82[ASN][1000 genomes]
rs12191770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12195789	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12199525	0.80[ASN][1000 genomes]
rs12209948	1.00[ASN][1000 genomes]
rs4236121	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4236122	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289638	1.00[ASN][1000 genomes]
rs4571554	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4712089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712090	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4712092	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4712094	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4715516	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416378	0.82[ASN][1000 genomes]
rs62416416	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975482	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72978512	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367608	0.81[AMR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54972800-54974800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:54973000-54974200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:54973600-54974200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:54973600-54974200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:54973800-54974800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:54974000-54974400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:54974000-54974400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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